species:   Drmel
pid:       MI0005855
parent:    dme-mir-994
paralog:   
locus:     NT_033777.3:10408137-10408227
matures:   ['CUAAGGAAAUAGUAGCCGUGAU', 'CACAGUUGCUGUUUCUUUUAGAU']
srr:       SRR11906543
genome:    /Users/jax/+Genomes/Animal_genomes/Drmel.GCF_000001215.4_Release_6_plus_ISO1_MT_genomic.fa
alignment: /media/data/njohnson/+SeqLibraries/FunHP_libraries/Drmel.SRR11906543.cram
call:      samtools view /media/data/njohnson/+SeqLibraries/FunHP_libraries/Drmel.SRR11906543.cram NT_033777.3:10408137-10408227

0 out of bounds
9 alignments
9 proper strand
8 stranded perfect matches

         ************************                      *************************           
UAUCGAGUUAUCUAAGGAAAUAGUAGCCGUGAUUUUACCCAAGAAUUUUUCACAUAUCACAGUUGCUGUUUCUUUUAGAUAGCUCUUUUGU
....(((((((((((((((((((((((.(((((......................))))).))))))))))).))))))))))))......
-----------CUAAGGAAAUAGUAGCCGUGAU---------------------------------------------------------- l=22 a=4 c
---------------------------------------------------------CACAGUUGCUGUUUCUUUUAGAU----------- l=23 a=0 c*
-----------CUAAGGAAAUAGUAGCCGUGAU---------------------------------------------------------- l=22 a=4 ma
---------------------------------------------------------CACAGUUGCUGUUUCUUUUAGAU----------- l=23 a=0 ma*

----------UCUAAGGAAAUAGUAGCCGUGA----------------------------------------------------------- l=22 a=2 
-----------CUAAGGAAAUAGUAGCCGUGAU---------------------------------------------------------- l=22 a=4 (c,ma)
------------UAAGGAAAUAGUAGCCGUGA----------------------------------------------------------- l=20 a=1 
------------UAAGGAAAUAGUAGCCGUGAUU--------------------------------------------------------- l=22 a=1 
------------------------------------------------------UAUCACAGUUGCUGUUUCgUUU--------------- l=22 a=1 

mb-01011
ax-1011111
ku-01
ss-111111111110
fn-111
